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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35882434_35882778_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35882434 - 35882778
Intron Length:
345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTAG
5'SS Class:
major
3'SS Sequence:
TTCCTCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
TTCCTCTTTACA
Flanking Amino Acid:
WFGGSMLASTPEFYQVCHTK
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
69
38.5
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
88.4
0.86
0.7
83.3
25.2
Minor 5ss
41.7
-0.9
2.8
54.8
43.4
Minor BPS
62.5
0.39
1.6
72.39
39.3

Associated Gene:

Gene:
ACTR3
Ensembl Gene ID:
ENSAPLG00000012845
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039461
35854503 - 35884925
30423
ENSAPLT00000031477
35854503 - 35882905
28403
ENSAPLT00000019658
35871149 - 35882905
11757
ENSAPLT00000013405
35855826 - 35882905
27080