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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3589003_3590194_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3589003 - 3590194
Intron Length:
1192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCCTG
5'SS Class:
major
3'SS Sequence:
TCTCTAATGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CATTTCTGAACT
Flanking Amino Acid:
NIRKSKRNLQDNFQEDPIHM
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.3
46
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
70.5
0.46
1
66.5
38.4
Minor 5ss
47.6
-0.2
2.8
64.4
47
Minor BPS
70.4
0.72
1.4
81.77
39.5

Associated Gene:

Gene:
STAT1
Ensembl Gene ID:
ENSAPLG00000013226
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013883
3587344 - 3608452
21109