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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3590294_3592146_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3590294 - 3592146
Intron Length:
1853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTGCCTCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTTTGTTCTACT
Flanking Amino Acid:
ILNSAQLSNQMEVGSVQNTV
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84
30.2
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
76.1
0.59
0.8
73.7
31.3
Minor 5ss
39.5
-1.2
2.8
48.7
47.5
Minor BPS
49.9
0.07
2.3
80.12
42

Associated Gene:

Gene:
STAT1
Ensembl Gene ID:
ENSAPLG00000013226
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013883
3587344 - 3608452
21109