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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3592502_3593389_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3592502 - 3593389
Intron Length:
888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTTAT
U12 Branch Point Sequence:
TGTTCTTTAGCT
Flanking Amino Acid:
DFKCKTLQNREHEPNGVSQE
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.5
1.05
0.7
92.2
16.5
Major BPS
65.9
0.39
1.2
57.6
41.3
Major PPT
88.7
0.87
0.7
83.4
31.6
Minor 5ss
32
-2.1
2.8
41.5
45.1
Minor BPS
74.8
0.86
1.5
88.81
36

Associated Gene:

Gene:
STAT1
Ensembl Gene ID:
ENSAPLG00000013226
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013883
3587344 - 3608452
21109