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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3594235_3594532_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3594235 - 3594532
Intron Length:
298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
CCTGTAATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
CACCCTGTAATT
Flanking Amino Acid:
PNACLDQLQNWFTIVAESLQ
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.8
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
69.5
0.44
0.9
62.9
37.3
Minor 5ss
38.9
-1.2
3
50.6
40.1
Minor BPS
47.6
-0.1
2
61.67
43

Associated Gene:

Gene:
STAT1
Ensembl Gene ID:
ENSAPLG00000013226
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013883
3587344 - 3608452
21109