About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3596622_3597788_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3596622 - 3597788
Intron Length:
1167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATGTTGT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTTTTGACA
Flanking Amino Acid:
YNLKVKVLFDKDVSEKNSVK
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
74.2
37
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89
0.88
0.8
87.5
30
Minor 5ss
49.7
-0
2.4
66.6
38.9
Minor BPS
79.3
0.92
1
85.48
26.3

Associated Gene:

Gene:
STAT1
Ensembl Gene ID:
ENSAPLG00000013226
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013883
3587344 - 3608452
21109