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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_35978112_35978349_F

Intron Information:

Intron Rank:
147739
Intron Class:
major
Intron Phase:
Intron Coordinates:
35978112 - 35978349
Intron Length:
238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATGTTG
5'SS Class:
major
3'SS Sequence:
GTTTCTCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
AATCCATTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
65
41.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
76.9
0.61
1
73.4
37
Minor 5ss
40.6
-1.1
3.3
52.4
45.8
Minor BPS
57.6
0.23
1.7
67.95
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029508
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022786
35964963 - 35979963
15001