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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3597819_3597900_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3597819 - 3597900
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTAGC
5'SS Class:
major
3'SS Sequence:
TTTCTTTGTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
AGACCTCTAATT
Flanking Amino Acid:
KDVSEKNSVKGFRKFNILGT
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
68.8
42.3
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
75.8
0.58
1.1
78.8
33.4
Minor 5ss
41.7
-0.9
2.5
45.6
42.8
Minor BPS
51.3
0.12
1.6
66.58
37.7

Associated Gene:

Gene:
STAT1
Ensembl Gene ID:
ENSAPLG00000013226
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013883
3587344 - 3608452
21109