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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3599740_3600240_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3599740 - 3600240
Intron Length:
501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTGCA
5'SS Class:
major
3'SS Sequence:
CCTTCCATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
TTCCCTTCCATT
Flanking Amino Acid:
WFNMLSTDPKNLSFFLNPPY
Intron Amino Acid Position:
599

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
69.6
34.6
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
74.8
0.56
0.8
66.4
34.3
Minor 5ss
39.1
-1.2
3
50.7
45.7
Minor BPS
48
-0
1.9
69.06
42.6

Associated Gene:

Gene:
STAT1
Ensembl Gene ID:
ENSAPLG00000013226
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013883
3587344 - 3608452
21109