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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3600377_3602052_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3600377 - 3602052
Intron Length:
1676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGATCT
5'SS Class:
major
3'SS Sequence:
TTATTCTGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
CCTTACGGAACA
Flanking Amino Acid:
QLSMLGEKLLGPTSGGSHDG
Intron Amino Acid Position:
644

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
69.6
35.3
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
82.2
0.72
0.9
81.2
36.2
Minor 5ss
46.8
-0.3
2.8
62.8
42.8
Minor BPS
46.1
-0.3
2.3
60.88
45

Associated Gene:

Gene:
STAT1
Ensembl Gene ID:
ENSAPLG00000013226
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013883
3587344 - 3608452
21109