Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_36014001_36034598_F

Intron Information:

Intron Rank:

126125

Intron Class:

major

Intron Phase:

Intron Coordinates:

36014001 - 36034598

Intron Length:

20598

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGTCAA

5'SS Class:

strong_major

3'SS Sequence:

GTTTTCTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCCAAT

U12 Branch Point Sequence:

TTATCTCCAATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.1

1.06

0.7

83.2

30.8

Major BPS

59.5

0.24

1.3

68.4

35.9

Major PPT

86.8

0.83

0.7

81.5

30.6

Minor 5ss

33.5

-1.9

2.9

40.7

45.5

Minor BPS

49.5

-0.1

1.9

61.26

40.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017952

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043973

36013840 - 36034753

20914