Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3602109_3602505_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3602109 - 3602505

Intron Length:

397

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGAACT

5'SS Class:

strong_major

3'SS Sequence:

CTCTGAATTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGAA

U12 Branch Point Sequence:

TACCTCTGAATT

Flanking Amino Acid:

GLIPWTRFCKENINDKNFPF

Intron Amino Acid Position:

663

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.83

0.9

79.9

32.9

Major BPS

69.8

0.49

37.5

Major PPT

74.5

0.55

0.9

70.2

39.1

Minor 5ss

42.2

-0.9

2.8

58.8

45.4

Minor BPS

58.9

0.36

1.4

71.18

39.8

Associated Gene:

Gene:

STAT1

Ensembl Gene ID:

ENSAPLG00000013226

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013883

3587344 - 3608452

21109