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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3605662_3606228_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3605662 - 3606228
Intron Length:
567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCATTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTTCTCTCATT
Flanking Amino Acid:
FGKYYSRPKEAPEPMDLDGP
Intron Amino Acid Position:
803

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
74.9
35.3
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
71.5
0.48
1
71.4
31.9
Minor 5ss
29.4
-2.4
3.1
33.3
41.7
Minor BPS
58.1
0.34
2
84.17
37.2

Associated Gene:

Gene:
STAT1
Ensembl Gene ID:
ENSAPLG00000013226
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013883
3587344 - 3608452
21109