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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_36060975_36061752_F

Intron Information:

Intron Rank:
126119
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
36060975 - 36061752
Intron Length:
778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATACTCT
5'SS Class:
weak_major
3'SS Sequence:
TTATTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTCATTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
67.4
38.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
93.1
0.97
0.7
92.4
26
Minor 5ss
56.8
0.23
2.5
74.3
42
Minor BPS
49.8
0.06
1.8
71.17
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017952
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018687
36013840 - 36062161
48322