Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3606305_3606740_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3606305 - 3606740

Intron Length:

436

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTAAGTTTG

5'SS Class:

major

3'SS Sequence:

TTCTTCCTTTTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCTTTAT

U12 Branch Point Sequence:

TGATCCTTTATC

Flanking Amino Acid:

IKTELISVSEVHPSRLQSPE

Intron Amino Acid Position:

828

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.1

0.59

1.1

71.7

40.8

Major BPS

71.5

0.54

1.1

63.3

42.8

Major PPT

86.3

0.82

0.6

85.3

22.1

Minor 5ss

45.8

-0.4

2.8

59.1

45.3

Minor BPS

66.4

0.5

1.6

72.32

38.6

Associated Gene:

Gene:

STAT1

Ensembl Gene ID:

ENSAPLG00000013226

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013883

3587344 - 3608452

21109