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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_36077195_36082562_F

Intron Information:

Intron Rank:
141715
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
36077195 - 36082562
Intron Length:
5368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTATGCATC
5'SS Class:
weak_major
3'SS Sequence:
ATTTTTTGTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
ATTTTTTGTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.6
0.18
1.4
60.1
44.7
Major BPS
85
0.87
0.8
85.6
23
Major PPT
84.7
0.78
0.9
80.4
36.6
Minor 5ss
56.7
0.23
2.4
73.8
35.5
Minor BPS
53.6
0.11
1.7
69.84
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026312
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033632
36076442 - 36090785
14344