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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_36082734_36089988_F

Intron Information:

Intron Rank:
141716
Intron Class:
major
Intron Phase:
Intron Coordinates:
36082734 - 36089988
Intron Length:
7255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CTGCCCTGAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
80.7
0.69
0.8
75.9
32.8
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
64.3
0.44
1.5
69.89
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026312
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033632
36076442 - 36090785
14344