Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_36117647_36118101_R

Intron Information:

Intron Rank:

151309

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

36117647 - 36118101

Intron Length:

455

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

GGACAAACCGCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCTTAAT

U12 Branch Point Sequence:

TTTCCCTTAATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.7

0.94

0.8

93.7

19.8

Major BPS

74.6

0.61

1.1

75.5

35.1

Major PPT

50.6

0.02

40.9

37.8

Minor 5ss

43.4

-0.7

2.9

60.8

37.6

Minor BPS

81.4

0.85

1.2

81.08

34.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028944

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042470

36117530 - 36131348

13819

ENSAPLT00000024585

36116615 - 36131348

14734