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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3613126_3613212_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3613126 - 3613212
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TCCCCTCCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
GCATGCTGATCT
Flanking Amino Acid:
ACKVNPFPKDRWNNTPMDEA
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
69.3
0.43
0.7
61.6
29
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
45.8
-0.2
2.1
62.49
46.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012742
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013327
3612969 - 3655295
42327