Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3613457_3614329_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

3613457 - 3614329

Intron Length:

873

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAAACC

5'SS Class:

strong_major

3'SS Sequence:

CTTTTTTTTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CTTTCCATAATT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

0.9

74.9

33.2

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

92.1

0.95

0.5

92.3

18.1

Minor 5ss

34.1

-1.8

44.4

43.1

Minor BPS

74.2

0.84

1.6

88.85

36.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012742

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013327

3612969 - 3655295

42327