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Intron Name: Anas_platyrhynchos_platyrhynchos_7_3614392_3627692_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

3614392 - 3627692

Intron Length:

13301

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAAGTTGA

5'SS Class:

strong_major

3'SS Sequence:

TCTCTCTTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATAAAC

U12 Branch Point Sequence:

GCTGAATAAACT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.9

0.85

0.9

38.1

Major BPS

55.8

0.15

29.3

Major PPT

84.7

0.78

0.7

80.7

24.5

Minor 5ss

39.1

-1.2

2.8

40.9

45.4

Minor BPS

44.5

-0.3

2.1

62.66

46.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012742

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013327

3612969 - 3655295

42327