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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_36200812_36206820_R

Intron Information:

Intron Rank:
144361
Intron Class:
major
Intron Phase:
Intron Coordinates:
36200812 - 36206820
Intron Length:
6009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
ATCTTCATGTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GTCTTCTCAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
78.2
36.4
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
60
0.23
1.2
65.3
39.6
Minor 5ss
42.3
-0.9
2.8
55.7
41.6
Minor BPS
60.8
0.32
1.5
66.75
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024938
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025975
36199231 - 36206955
7725