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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_36259480_36260883_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
36259480 - 36260883
Intron Length:
1404

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAT|GCCATCTCA
5'SS Class:
weak_major
3'SS Sequence:
TCCATTCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTCCTTTTATT
Flanking Amino Acid:
YWNELGSNSPPQR
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.9
0.05
1.4
48.5
41.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.8
0.56
0.8
69.7
31
Minor 5ss
31.7
-2.1
3.9
44.4
43.2
Minor BPS
67.9
0.65
1.6
85.32
34.8

Associated Gene:

Gene:
DPP10
Ensembl Gene ID:
ENSAPLG00000012081
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012677
36259471 - 36460191
200721