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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_36259800_36260894_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
36259800 - 36260894
Intron Length:
1095

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTATGTGGC
5'SS Class:
major
3'SS Sequence:
AGGAACTTGGAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
AGPGHGEGERFNSPPQRNWK
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.3
0.39
1.1
57.9
39.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
47.1
-0.1
1.2
41.8
42.4
Minor 5ss
41.7
-0.9
3.2
57.5
41.7
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
DPP10
Ensembl Gene ID:
ENSAPLG00000012081
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029499
36259729 - 36460191
200463