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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3627786_3629316_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3627786 - 3629316
Intron Length:
1531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TAAATATTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TGTTATTTAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.2
36.4
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
73.7
0.53
1
66.6
43.5
Minor 5ss
38.5
-1.3
2.8
50.4
39.2
Minor BPS
67.5
0.63
1.6
83.3
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012742
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013327
3612969 - 3655295
42327
Gene:
Ensembl Gene ID:
ENSAPLG00000019554
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036938
3626722 - 3642532
15811