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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3630718_3633047_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3630718 - 3633047
Intron Length:
2330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCATAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTCTTTTTCATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
83.3
28.2
Major BPS
84.4
0.85
1
84
34.5
Major PPT
73.5
0.53
1
80.4
30.5
Minor 5ss
36.1
-1.6
2.7
45.4
42.7
Minor BPS
57.8
0.24
1.7
69.67
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012742
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013327
3612969 - 3655295
42327
Gene:
Ensembl Gene ID:
ENSAPLG00000019554
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036938
3626722 - 3642532
15811