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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3633099_3633618_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3633099 - 3633618
Intron Length:
520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGATCTC
5'SS Class:
major
3'SS Sequence:
TTCCTTCATTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TGTTCCTTCATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1
65.5
40.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
82.5
0.73
0.8
81.3
29.6
Minor 5ss
31.3
-2.1
3.3
43.3
44.4
Minor BPS
73.9
0.83
1.7
88.65
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012742
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013327
3612969 - 3655295
42327
Gene:
Ensembl Gene ID:
ENSAPLG00000019554
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036938
3626722 - 3642532
15811