Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3633686_3634824_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

3633686 - 3634824

Intron Length:

1139

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAC|GTGAGTATT

5'SS Class:

major

3'SS Sequence:

TATTTATTTCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTATTTATTT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.9

0.68

1.2

86.9

30.1

Major BPS

96.5

1.15

0.6

34.2

Major PPT

74.7

0.56

1.1

72.7

41.4

Minor 5ss

37.6

-1.4

50.6

39.2

Minor BPS

64.4

0.53

1.7

84.57

36.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012742

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013327

3612969 - 3655295

42327

Gene:

Ensembl Gene ID:

ENSAPLG00000019554

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036938

3626722 - 3642532

15811