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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3635179_3642473_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3635179 - 3642473
Intron Length:
7295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTTTTGTAAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
83.1
28.4
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
92.5
0.96
0.6
88.3
21.4
Minor 5ss
34.5
-1.8
3.1
48.5
47.2
Minor BPS
55.7
0.26
2.3
82.74
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012742
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013327
3612969 - 3655295
42327
Gene:
Ensembl Gene ID:
ENSAPLG00000019554
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036938
3626722 - 3642532
15811