About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_36418719_36420436_F


Intron Information:

Intron Rank:
8

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
36418719 - 36420436

Intron Length:
1718

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTAAGATGT

5'SS Class:
strong_major

3'SS Sequence:
TCTGTTTTTGCAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TAGTTAT

U12 Branch Point Sequence:
TGTTACAGACCC

Flanking Amino Acid:
FNGIADWLYEEELLHSHIAH

Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
91.6
0.98
0.8
81.6
33.2

Major BPS
73.5
0.58
1.2
63.7
43.9

Major PPT
88.6
0.87
0.7
83.9
31

Minor 5ss
39.7
-1.2
3.1
56.6
47.5

Minor BPS
44.9
-0.4
2.1
62.55
42

Associated Gene:

Gene:
DPP10

Ensembl Gene ID:

Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

36259729 - 36460191
200463

36259471 - 36460191
200721