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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3642533_3646819_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3642533 - 3646819
Intron Length:
4287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTTATTTCACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
80.7
31.6
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
88.2
0.86
0.7
83.7
30.9
Minor 5ss
36.5
-1.5
3.6
53.2
45
Minor BPS
63.3
0.41
1.9
80.03
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012742
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013327
3612969 - 3655295
42327