About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_36439612_36443165_F


Intron Information:

Intron Rank:
15

Intron Class:
major-like

Intron Phase:
1

Intron Coordinates:
36439612 - 36443165

Intron Length:
3554

Sequence Information:

Terminal Dinucleotides:
GC-AG

5'SS Sequence:
TAA|GCACTGAAG

5'SS Class:
weak_major

3'SS Sequence:
CTGTAACTCTCAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TATTGAT

U12 Branch Point Sequence:
TTTTCTGTAACT

Flanking Amino Acid:
DENTQKIYFLTCFFFLFSTD

Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
59.2
0.22
1.3
52.9
44.4

Major BPS
88.6
0.96
0.8
77.7
37.1

Major PPT
70.4
0.46
0.9
66.3
39.5

Minor 5ss
22
-3.2
4
30.1
37.2

Minor BPS
74.9
0.86
1.9
95.57
31.2

Associated Gene:

Gene:
DPP10

Ensembl Gene ID:

Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

36259729 - 36460191
200463

36259471 - 36460191
200721