About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_36456546_36457156_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36456546 - 36457156
Intron Length:
611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTAACTTATACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTAACT
Flanking Amino Acid:
VAPITDMKLYASAFSERYLG
Intron Amino Acid Position:
607

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
88.7
25.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.1
0.57
1
69.4
40.5
Minor 5ss
36.4
-1.5
3
48.3
41.8
Minor BPS
78.3
0.97
1.3
91.5
30.9

Associated Gene:

Gene:
DPP10
Ensembl Gene ID:
ENSAPLG00000012081
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012677
36259471 - 36460191
200721
ENSAPLT00000029499
36259729 - 36460191
200463