About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3646984_3648441_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3646984 - 3648441
Intron Length:
1458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATATTTT
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
GCGTCTTCATCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
82.9
29.9
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
82
0.72
0.9
80.5
37
Minor 5ss
55.6
0.19
2.5
75.5
40.6
Minor BPS
49.1
0.01
1.8
64.49
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012742
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013327
3612969 - 3655295
42327
Gene:
Ensembl Gene ID:
ENSAPLG00000027598
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031210
3634821 - 3656530
21710