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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3648522_3649239_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3648522 - 3649239
Intron Length:
718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCATG
5'SS Class:
major
3'SS Sequence:
TTCATTGTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTATTTTTCATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.2
72.7
44.5
Major BPS
100
1.24
0.5
100
0
Major PPT
67.5
0.39
1
64.5
41.4
Minor 5ss
48.5
-0.1
2.6
66
45.2
Minor BPS
61.3
0.44
1.7
79.64
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012742
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013327
3612969 - 3655295
42327
Gene:
Ensembl Gene ID:
ENSAPLG00000027598
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031210
3634821 - 3656530
21710