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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3655296_3655772_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3655296 - 3655772
Intron Length:
477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TTAATTGTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATTGTTTAATT
Flanking Amino Acid:
EKIPVHKFITALKSTGLRTS
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71
35.3
Major BPS
100
1.24
0.5
100
0
Major PPT
64.7
0.33
1.1
61.4
44.3
Minor 5ss
43.4
-0.7
2.8
60.6
43.7
Minor BPS
69.7
0.7
1.7
84.68
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027598
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031210
3634821 - 3656530
21710