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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_36708863_36709702_F

Intron Information:

Intron Rank:
138664
Intron Class:
major
Intron Phase:
Intron Coordinates:
36708863 - 36709702
Intron Length:
840

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGTAATA
5'SS Class:
major
3'SS Sequence:
AAATTTATGTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATATCTTAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.1
67.3
37.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
61.1
0.25
1.1
60.3
44.8
Minor 5ss
37.4
-1.4
3.3
48.9
41.5
Minor BPS
65
0.55
1.6
78.82
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024648
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044118
36708736 - 36711128
2393