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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_36715833_36717105_F

Intron Information:

Intron Rank:
137729
Intron Class:
major
Intron Phase:
Intron Coordinates:
36715833 - 36717105
Intron Length:
1273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ACTTAAATTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTTTTGTAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
71.7
0.49
1
63.7
41
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
59.7
0.38
2.3
86.99
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024171
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041562
36715439 - 36717925
2487