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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_36860458_36862403_R

Intron Information:

Intron Rank:
128870
Intron Class:
major
Intron Phase:
Intron Coordinates:
36860458 - 36862403
Intron Length:
1946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
GACTTACTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTATTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
68.8
43.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
73
0.52
1
62.6
43.1
Minor 5ss
33.1
-1.9
2.8
33
41.8
Minor BPS
57.3
0.31
1.6
74.19
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016468
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039760
36848619 - 36867297
18679