Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_36906819_36907514_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

36906819 - 36907514

Intron Length:

696

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTTAA

5'SS Class:

strong_major

3'SS Sequence:

CTCTGCAAAAAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GACTGAT

U12 Branch Point Sequence:

TTCTCTGCAAAA

Flanking Amino Acid:

VQYDPPDDPKEYIHRVGRTA

Intron Amino Acid Position:

487

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

23.8

Major BPS

65.8

0.39

1.2

57.3

41.7

Major PPT

49.7

-0

1.1

36.3

Minor 5ss

41.2

-1

2.8

49.4

41.3

Minor BPS

46.9

-0.2

2.2

64.41

42.2

Associated Gene:

Gene:

DDX18

Ensembl Gene ID:

ENSAPLG00000011648

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025737

36900881 - 36909897

9017

ENSAPLT00000012215

36900881 - 36910456

9576