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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3693235_3694052_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3693235 - 3694052
Intron Length:
818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTTAGTGCC
5'SS Class:
major
3'SS Sequence:
CTTACTCTCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GTACTTTTAACT
Flanking Amino Acid:
PGGEAKSQSSEGLGILKDFP
Intron Amino Acid Position:
511

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.2
66.1
41.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
78.5
0.64
0.8
72.9
31.7
Minor 5ss
29.9
-2.3
2.9
29.8
35.2
Minor BPS
69.7
0.7
1.2
78.8
36.9

Associated Gene:

Gene:
NAB1
Ensembl Gene ID:
ENSAPLG00000012579
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013123
3692936 - 3713843
20908