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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_36938049_36939868_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36938049 - 36939868
Intron Length:
1820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTAATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
DDKKVYLEKEVNLLNSIHDN
Intron Amino Acid Position:
522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
87.1
0.83
0.8
81
35.3
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
CCDC93
Ensembl Gene ID:
ENSAPLG00000010805
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036029
36937327 - 36970627
33301
ENSAPLT00000023548
36933931 - 36970627
36697
ENSAPLT00000011340
36932903 - 36970627
37725