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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_36939952_36942295_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36939952 - 36942295
Intron Length:
2344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATTATTCTACCT
Flanking Amino Acid:
QKRFIELYSQVSATHKETKQ
Intron Amino Acid Position:
494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
79.7
35.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
93
0.97
0.6
88.6
20.7
Minor 5ss
45
-0.5
2.5
51.2
45.5
Minor BPS
48
-0
1.9
71.14
39.9

Associated Gene:

Gene:
CCDC93
Ensembl Gene ID:
ENSAPLG00000010805
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036029
36937327 - 36970627
33301
ENSAPLT00000023548
36933931 - 36970627
36697
ENSAPLT00000011340
36932903 - 36970627
37725