Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_36945279_36945827_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36945279 - 36945827

Intron Length:

549

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TCTTCAAATTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTAAT

U12 Branch Point Sequence:

GGATCTTCAAAT

Flanking Amino Acid:

LETIESQADSSVLQNLRALV

Intron Amino Acid Position:

382

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

98.4

1.14

0.6

94.3

17.7

Major BPS

77.9

0.69

0.8

75.9

Major PPT

70.3

0.46

0.9

68.2

36.7

Minor 5ss

38.6

-1.3

3.4

57.8

46.8

Minor BPS

54.3

0.21

1.7

68.53

41.5

Associated Gene:

Gene:

CCDC93

Ensembl Gene ID:

ENSAPLG00000010805

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023548

36933931 - 36970627

36697

ENSAPLT00000011340

36932903 - 36970627

37725

ENSAPLT00000036029

36937327 - 36970627

33301