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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_36945902_36946831_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36945902 - 36946831
Intron Length:
930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTCT
5'SS Class:
strong_major
3'SS Sequence:
TTATAACCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTTATAACC
Flanking Amino Acid:
CTEAKKTLTEVKSYSEKLDK
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
75
35.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
67.1
0.38
0.9
64.1
37.7
Minor 5ss
39.4
-1.2
3.3
57.2
47
Minor BPS
65.2
0.46
1.5
75.69
34.2

Associated Gene:

Gene:
CCDC93
Ensembl Gene ID:
ENSAPLG00000010805
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011340
36932903 - 36970627
37725
ENSAPLT00000036029
36937327 - 36970627
33301
ENSAPLT00000023548
36933931 - 36970627
36697