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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_36946895_36949751_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36946895 - 36949751
Intron Length:
2857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTGTAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TAAAATTTAACT
Flanking Amino Acid:
ILQKTKLLEELQAKCADLQA
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
72
0.49
0.9
68.9
35.9
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
63.2
0.49
1.5
76.26
39.6

Associated Gene:

Gene:
CCDC93
Ensembl Gene ID:
ENSAPLG00000010805
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023548
36933931 - 36970627
36697
ENSAPLT00000011340
36932903 - 36970627
37725
ENSAPLT00000036029
36937327 - 36970627
33301