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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_36949869_36955219_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36949869 - 36955219
Intron Length:
5351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTATTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TACTCTTTATTT
Flanking Amino Acid:
KQIVSEYAEKQSELSAEERP
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.6
94.3
17.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
82.3
0.73
0.7
81.4
29
Minor 5ss
38.6
-1.3
3.4
57.8
46.8
Minor BPS
64.3
0.53
1.6
76.5
40.9

Associated Gene:

Gene:
CCDC93
Ensembl Gene ID:
ENSAPLG00000010805
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036029
36937327 - 36970627
33301
ENSAPLT00000023548
36933931 - 36970627
36697
ENSAPLT00000011340
36932903 - 36970627
37725