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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3695472_3697911_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3695472 - 3697911
Intron Length:
2440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACCAA
5'SS Class:
major
3'SS Sequence:
GCTTTATTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
SEDSAALNSQSEKVMAKQME
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
67.5
39.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.1
0.75
0.8
77.1
36.1
Minor 5ss
36.5
-1.5
3.1
47
48.3
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
NAB1
Ensembl Gene ID:
ENSAPLG00000012579
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013123
3692936 - 3713843
20908