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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_36961494_36965160_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36961494 - 36965160
Intron Length:
3667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAGTC
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTTCCACTGACT
Flanking Amino Acid:
DFIHIFPVVQWLVKRAIETR
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
75.2
32.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
86.9
0.83
0.7
84.6
29.4
Minor 5ss
35.1
-1.7
3.5
50.5
46.1
Minor BPS
56.9
0.3
2
83.54
36.6

Associated Gene:

Gene:
CCDC93
Ensembl Gene ID:
ENSAPLG00000010805
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023548
36933931 - 36970627
36697
ENSAPLT00000011340
36932903 - 36970627
37725
ENSAPLT00000036029
36937327 - 36970627
33301