Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_36965273_36967696_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36965273 - 36967696

Intron Length:

2424

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGTTGT

5'SS Class:

strong_major

3'SS Sequence:

CTTTTTATAATAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

CTTTTTATAATA

Flanking Amino Acid:

FQENSTIGQKIALTEKIVSV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

80.8

34.4

Major BPS

96.5

1.15

0.6

34.2

Major PPT

77.2

0.61

0.9

74.5

33.7

Minor 5ss

44.3

-0.6

2.9

62.8

41.9

Minor BPS

60.5

0.33

1.6

71.1

35.7

Associated Gene:

Gene:

CCDC93

Ensembl Gene ID:

ENSAPLG00000010805

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036029

36937327 - 36970627

33301

ENSAPLT00000023548

36933931 - 36970627

36697

ENSAPLT00000011340

36932903 - 36970627

37725